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10X Genomics cell ranger arc
Cell Ranger Arc, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 86/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/cell+ranger+arc/cellranger/pmc13156634-49-0-9
Average 86 stars, based on 1 article reviews
cell ranger arc - by Bioz Stars, 2026-10
86/100 stars

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Article Title: Single-nucleus multiome analysis in the human prefrontal cortex identifies gene expression and cis -regulatory elements associated with aging
Article Snippet: Cell Ranger-ARC (v2.0.2) , https://www.10xgenomics.com/support/software/cell-ranger-arc/latest , N/A.

Article Title: Intranasal HSV-1 Infection Drives Region-Specific Interferon-Dominant Microglial Remodeling
Article Snippet: Reads were aligned to the mm10 reference genome using Cell Ranger ARC (10x Genomics).

Article Title: Protocol for identifying cell-type-specific genes associated with disease risk using single-cell eQTL data
Article Snippet: Cell Ranger ARC (v2.0.2) a , 10× Genomics , https://www.10xgenomics.com/support/single-cell-multiome-atac-plus-gene-expression.

Article Title: Reprogramming Dedifferentiation Regulatory Networks Preserves Human Chondrocyte Phenotypes
Article Snippet: Libraries were sequenced on an Illumina platform using paired-end sequencing, with a target depth of 50,000 reads per cell total (25,000 reads per cell for the gene expression library and 25,000 reads per cell for the ATAC library).

Article Title: Post-replicative initial expression of PAX6 during neuroectoderm differentiation.
Article Snippet: The resulting libraries were cleaned, quantified, and subjected to Illumina sequencing on the NovaSeq platform (PE150, 50 million reads) at Hangzhou Repugene Technology Co., Ltd. CUT&Tag FASTQ files were mapped to hg38 reference genome with Bowtie2 (Langmead and Salzberg, 2012) and SAM-format mapping files were sorted, quality-checked, and format-transformed with SAMtools command “sort”, “flagstat” and “view” (Danecek et al, 2021).

Article Title: Single Nucleus MultiOmics and In Vivo Massively Parallel Reporter Assays Identify Functional Sex-Biased Enhancers Linked to Liver Metabolism and Disease
Article Snippet: Processing of the 10X Genomics MultiOmic datasets was carried out by Dr. Kritika Karri and Dr. Maxim Pyatkov of this laboratory, using Cell Ranger ARC (v.2.0.0) for initial sample processing, followed by analysis using Signac (v1.1.0) [ ] and Seurat (4.1.0) [ ].

Article Title: Simultaneous capture of single cell RNA-seq, ATAC-seq, and CRISPR perturbation enables multiomic screens to identify gene regulatory relationships
Article Snippet: Cell Ranger ARC , https://www.10xgenomics.com/support/software/cell-ranger-arc/latest , N/A.

Gene Expression:

Article Title: Analysis of changes in intercellular communications in Alzheimer’s disease reveals conserved changes in glutamatergic transmission in mice and humans
Article Snippet: .. Alignment of the ATAC-seq and gene expression libraries to the mouse reference genome (mm10, v2020-A) was done using Cell Ranger ARC (v2.0.1, 10x Genomics). ..



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